Structural phylogenetic analysis of activation-induced deaminase function

H. Travis Ichikawa, Mark P. Sowden, Andrew T. Torelli, Jürgen Bachl, Pinwei Huang, Geoffrey S.C. Dance, Shauna H. Marr, Jacques Robert, Joseph E. Wedekind, Harold C. Smith, Andrea Bottaro

Research output: Contribution to journalArticlepeer-review

30 Scopus citations


In mammals, activation-induced deaminase (AID) initiates somatic hypermutation (SHM) and class switch recombination (CSR) of Ig genes. SHM and CSR activities require separate regions within AID. A chromosome region maintenance 1 (CRM1)-dependent nuclear export signal (NES) at the AID C terminus is necessary for CSR, and has been suggested to associate with CSR-specific cofactors. CSR appeared late in AID evolution, during the emergence of land vertebrates from bony fish, which only display SHM. Here, we show that AID from African clawed frog (Xenopus laevis), but not pufferfish (Takifugu rubripes), can induce CSR in AID-deficient mouse B cells, although both are catalytically active in bacteria and mammalian cell systems, albeit at decreased level. Like mammalian AID, Takifugu AID is actively exported from the cell nucleus by CRM1, and the Takifugu NES can substitute for the equivalent region in human AID, indicating that all the CSR-essential NES motif functions evolutionarily predated CSR activity. We also show that fusion of the Takifugu AID catalytic domain to the entire human noncatalytic domain restores activity in mammalian cells, suggesting that AID features mapping within the noncatalytic domain, but outside the NES, influence its function.

Original languageEnglish (US)
Pages (from-to)355-361
Number of pages7
JournalJournal of Immunology
Issue number1
StatePublished - Jul 1 2006
Externally publishedYes

All Science Journal Classification (ASJC) codes

  • Immunology and Allergy
  • Immunology


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